Data and Knowledge
Share Data, Models and Software
Make an impact by sharing your neuroscience data, models and software on EBRAINSEBRAINS is open to integrating brain research technologies developed elsewhere and seeks collaboration with other research infrastructures.
EBRAINS Data and Knowledge services facilitate neuroscience research and discovery by providing online solutions to facilitate sharing of and access to research data, computational models, and software. These services revolve around an expert-driven Knowledge Graph which combines metadata ingestion pipelines, human-user input, and multiple quality assurance processes to help contributors and users by ensuring data consistency and quality.
Share Data, Models and Software
Make an impact by sharing your neuroscience data, models and software on EBRAINSFind Data, Models and Software
Find and access multimodal data, models and software in the EBRAINS Knowledge GraphLive Papers
Structured and interactive supplementary documents to complement journal publicationsBrain atlases provide spatial reference systems for neuroscience, giving the ability to navigate, characterise, and analyse information on the basis of anatomical location. Atlases define shape, location, and variability of brain regions in common coordinate spaces and allow interpretation, integration, and comparison of observations and measurements collected from different sources and different brains.
Mouse Brain Atlas
Explore open access 3D anatomical atlas for the mouse brainQuickNII and VisuAlign
Spatially register mouse and rat serial 2D brain images to 3D reference atlasesQUINT
Extract, quantify and analyse labelled features from rodent histological imagesRat Brain Atlas
Explore open access 3D anatomical atlas for the rat brainVoluBA
Spatially register high-resolution volumes of interest to 3D reference atlasesMultilevel Human Brain Atlas
A three-dimensional atlas that integrates the different facets of human brain organisation at the millimeter and micrometer levelJuGEx
Gene expression analysis in human brain atlas regionsMultilevel Macaque Monkey Brain Atlas
A three-dimensional atlas that integrates the different facets of macaque monkey brain organisation at the millimeter and micrometer levelIn research, simulation acts as the main conduit for interchange between experiment and theory. It is a powerful instrument in our endeavour to understand the human brain, which is a complex dynamic system with a multi-scale architecture, further complicated by significant differences between one person’s brain and another’s. The complexity and versatility of the brain, and the variations from one brain to another, are major scientific challenges, driving the development of simulation technology.
Neuromorphic Computing
Simulate or emulate spiking neural networks with neuromorphic compute systemsNeurorobotics Platform
Simulating intelligent agents within realistic environmentsNeuroScheme
Create, navigate, explore and interact with schematic representations of neurons and circuitsNeuroTessMesh
Visualise neural anatomy in great detailViSimpl
Study simulation data and their associated spatial and temporal features by exploratory visual analysisArbor
High-performance library for computational neuroscience simulations, ranging from single-cell models to large networksElephant
Analyse the neuronal dynamics of experiments and brain simulations with this Electrophysiology Analysis ToolkitNEST Desktop
Construct neuronal networks and explore network dynamics with the NEST Simulator GUINEST Simulator
A simulator for spiking neural network models of any sizeNESTML
A domain-specific language to write custom neuron modelsThe Virtual Brain
Create personalised brain models and simulate multi-scale networksPyNN
A simulator-independent language for building neuronal network modelsInteractive Workflows for Cellular Level Modeling
Build, reconstruct, and simulate data-driven brain modelsNEURON /CoreNEURON
A simulator for modelling individual neurons and networks of neuronsNetPyNE
Build, simulate, and analyze data-driven multiscale brain circuit modelsSnudda
Leverage your neuron morphologies and experimental data to create microcircuits with realistic connectivityBrain Scaffold Builder
Flexible and organized workflows for neural circuit reconstruction and simulation at different levels of detailEBRAINS offers brain-inspired tools and services to understand and leverage the computational capabilities of spiking neural networks. Contrary to standard deep neural networks, which consume considerable amounts of energy, spiking neural networks are key to understanding the human brain's ability to continuously learn and express higher cognitive functions while consuming only 20W.
Neuromorphic Computing
Simulate or emulate spiking neural networks with neuromorphic compute systemsNeurorobotics Platform
Simulating intelligent agents within realistic environmentsPyNN
A simulator-independent language for building neuronal network modelsThe Medical Data Analytics service currently provides the Medical Informatics Platform (MIP), a unique EBRAINS platform providing advanced analytics for diagnosis and research in clinical neuroscience research.
Collaboratory
Workspaces in the Cloud for your research, development, documentation, and collaborationComputing and storage resources
Apply for the computing and storage resources of FenixEBRAINS Community
A growing community within neuroscience, brain medicine, and brain-related technology