Data and Knowledge
Share Data, Models and Software
Make an impact by sharing your neuroscience data, models and software on EBRAINS
Discover our services
EBRAINS is open to integrating brain research technologies developed elsewhere and seeks collaboration with other research infrastructures.
Service Category
Data and Knowledge
EBRAINS Data and Knowledge services facilitate neuroscience research and discovery by providing online solutions to facilitate sharing of and access to research data, computational models, and software. These services revolve around an expert-driven Knowledge Graph which combines metadata ingestion pipelines, human-user input, and multiple quality assurance processes to help contributors and users by ensuring data consistency and quality.
Service Category
Atlases
Brain atlases provide spatial reference systems for neuroscience, giving the ability to navigate, characterise, and analyse information on the basis of anatomical location. Atlases define shape, location, and variability of brain regions in common coordinate spaces and allow interpretation, integration, and comparison of observations and measurements collected from different sources and different brains.
Atlases
Mouse Brain Atlas
Explore open access 3D anatomical atlas for the mouse brainAtlases
QuickNII and VisuAlign
Spatially register mouse and rat serial 2D brain images to 3D reference atlasesAtlases
QUINT
Extract, quantify and analyse labelled features from rodent histological imagesAtlases
Rat Brain Atlas
Explore open access 3D anatomical atlas for the rat brainAtlases
VoluBA
Spatially register high-resolution volumes of interest to 3D reference atlasesAtlases
Multilevel Human Brain Atlas
A three-dimensional atlas that integrates the different facets of human brain organisation at the millimeter and micrometer levelAtlases
JuGEx
Gene expression analysis in human brain atlas regionsAtlases
Multilevel Macaque Monkey Brain Atlas
A three-dimensional atlas that integrates the different facets of macaque monkey brain organisation at the millimeter and micrometer levelService Category
Simulation
In research, simulation acts as the main conduit for interchange between experiment and theory. It is a powerful instrument in our endeavour to understand the human brain, which is a complex dynamic system with a multi-scale architecture, further complicated by significant differences between one person’s brain and another’s. The complexity and versatility of the brain, and the variations from one brain to another, are major scientific challenges, driving the development of simulation technology.
Simulation, Brain-Inspired Technologies
Neuromorphic Computing
Simulate or emulate spiking neural networks with neuromorphic compute systemsSimulation, Brain-Inspired Technologies
Neurorobotics Platform
Simulating intelligent agents within realistic environmentsSimulation
NeuroScheme
Create, navigate, explore and interact with schematic representations of neurons and circuitsSimulation
NeuroTessMesh
Visualise neural anatomy in great detailSimulation
ViSimpl
Study simulation data and their associated spatial and temporal features by exploratory visual analysisSimulation
Arbor
High-performance library for computational neuroscience simulations, ranging from single-cell models to large networksSimulation
Elephant
Analyse the neuronal dynamics of experiments and brain simulations with this Electrophysiology Analysis ToolkitSimulation
NEST Desktop
Construct neuronal networks and explore network dynamics with the NEST Simulator GUISimulation
NEST Simulator
A simulator for spiking neural network models of any sizeSimulation
NESTML
A domain-specific language to write custom neuron modelsSimulation
The Virtual Brain
Create personalised brain models and simulate multi-scale networksSimulation, Brain-Inspired Technologies
PyNN
A simulator-independent language for building neuronal network modelsSimulation
Interactive Workflows for Cellular Level Modeling
Build, reconstruct, and simulate data-driven brain modelsSimulation
NEURON /CoreNEURON
A simulator for modelling individual neurons and networks of neuronsSimulation
NetPyNE
Build, simulate, and analyze data-driven multiscale brain circuit modelsSimulation
Snudda
Leverage your neuron morphologies and experimental data to create microcircuits with realistic connectivitySimulation
Brain Scaffold Builder
Flexible and organized workflows for neural circuit reconstruction and simulation at different levels of detailService Category
Brain-Inspired Technologies
EBRAINS offers brain-inspired tools and services to understand and leverage the computational capabilities of spiking neural networks. Contrary to standard deep neural networks, which consume considerable amounts of energy, spiking neural networks are key to understanding the human brain's ability to continuously learn and express higher cognitive functions while consuming only 20W.
Simulation, Brain-Inspired Technologies
Neuromorphic Computing
Simulate or emulate spiking neural networks with neuromorphic compute systemsSimulation, Brain-Inspired Technologies
Neurorobotics Platform
Simulating intelligent agents within realistic environmentsSimulation, Brain-Inspired Technologies
PyNN
A simulator-independent language for building neuronal network modelsService Category
Medical Data Analytics
The Medical Data Analytics service currently provides the Medical Informatics Platform (MIP), a unique EBRAINS platform providing advanced analytics for diagnosis and research in clinical neuroscience research.
Service Category
Community
Community
Collaboratory
Workspaces in the Cloud for your research, development, documentation, and collaborationCommunity
Computing and storage resources
Apply for the computing and storage resources of FenixCommunity
EBRAINS Community
A growing community within neuroscience, brain medicine, and brain-related technology