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Resources

Below you can find tutorials, selected datasets and documentation to help you use the tools and services EBRAINS offers. To find software and other digital tools, please refer to the dedicated tools page. Scientific publications may be found on the publications page. In the EBRAINS Knowledge Graph you can search all datasets and models.

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Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images

Nutil: A Pre- and Post-processing Toolbox for Histological Rodent Brain Section Images. Front. Neuroinform. 2020,14:37. https://doi.org/10.3389/fninf.2020.00037

Navigating the Murine Brain: Toward Best Practices for Determining and Documenting Neuroanatomical Locations in Experimental Studies

Navigating the murine brain: towards best practices for determining and documenting neuroanatomical locations in experimental studies. Frontiers in Neuroanatomy. 2018 Nov 2; 12: article 82. https://doi.org/10.3389/fnana.2018.00082

QUINT: Workflow for Quantification and Spatial Analysis of Features in Histological Images From Rodent Brain

QUINT: Workflow for quantification and spatial analysis of features in histological images from rodent brain. Front Neuroinform. 2019 Dec 3;13:75. https://doi.org/10.3389/fninf.2019.00075.

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool

Spatial registration of serial microscopic brain images to three-dimensional reference atlases with the QuickNII tool. PLosONE, 2019, 14(5): e0216796. https://doi.org/10.1371/journal.pone.0216796

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