KnowledgeSpace

KnowledgeSpace (KS) is a community-based encyclopedia for neuroscience that links brain research concepts to the data, models, and literature that support them. The KS framework:

  • combines the general descriptions of neuroscience concepts found in wikipedia with more their more detailed desrciptions from InterLex
  • links the latest PubMed citations with the descriptions of neuroscience concepts, and
  • provides users with access to the data and models linked to neuroscience research concepts found in some of the world’s leading neuroscience repositories.

Further, it serves as a framework where large-scale neuroscience projects can expose their data to the neuroscience community-at-large. KnowledgeSpace is a joint development between the Human Brain Project (HBP), the International Neuroinformatics Coordinating Facility (INCF), and the Neuroscience Information Framework (NIF).

Launch online
Source Code
Contributors
MM JG TG VM MA

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siibra-explorer

siibra-explorer is built around an interactive 3D view of the brain displaying a unique selection of detailed templates and parcellation maps for the human, macaque, rat or mouse brain, including BigBrain as a microscopic resolution human brain model at its full resolution of 20 micrometres.

Collaboratory

The EBRAINS Collaboratory offers researchers and developers a secure environment to work with others. You control the level of collaboration by sharing your projects with specific users, teams or all of the Internet. Many researchers are sharing their work already; several services, tools, datasets and other resources are publicly available, and many more are available for registered users.

MeshView

MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain. MeshView is available as an EBRAINS community app, accessible via a collab (further info: https://wiki.ebrains.eu/bin/view/Collabs/image-registration-and-analysis-demo/) Key features: orbiting view with toggleable opaque/transparent/hidden parcellation meshes rendering user defined cut surface as if meshes were solid objects rendering point-clouds (simple type-in, or loaded from a JSON format) coordinate system is compatible with QuickNII (https://www.nitrc.org/projects/quicknii)

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