MMCG Webserver

Prepare and run hybrid MD simulations

The Hybrid Molecular Mechanics/Coarse-Grained (MM/CG) is a server that helps in the preparation and running of multiscale molecular dynamics simulations of G protein-coupled receptors (GPCR) in complex with their ligands. The Hybrid MM/CG Webserver requires the structure of a GPCR/ligand complex as input and then guides the user through the preparation and running of the simulation.

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siibra-explorer

siibra-explorer is built around an interactive 3D view of the brain displaying a unique selection of detailed templates and parcellation maps for the human, macaque, rat or mouse brain, including BigBrain as a microscopic resolution human brain model at its full resolution of 20 micrometres.

Collaboratory

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MeshView

MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain. MeshView is available as an EBRAINS community app, accessible via a collab (further info: https://wiki.ebrains.eu/bin/view/Collabs/image-registration-and-analysis-demo/) Key features: orbiting view with toggleable opaque/transparent/hidden parcellation meshes rendering user defined cut surface as if meshes were solid objects rendering point-clouds (simple type-in, or loaded from a JSON format) coordinate system is compatible with QuickNII (https://www.nitrc.org/projects/quicknii)

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