NetPyNE GUI

The UI splits the workflows in two tabs available at the top of the screen: define your network and create network. The NetPyNE GUI is implemented on top of Geppetto, an open-source platform that provides the infrastructure for building tools for visualizing neuroscience models and data and for managing simulations in a highly accessible way.

The GUI is defined using JavaScript, React and HTML5. This offers a flexible and intuitive way to create advanced layouts while still enabling each of the elements of the interface to be synchronized with the Python model. The interactive Python backend is implemented as a Jupyter Notebook extension which provides direct communication with the Python kernel. This makes it possible to synchronize the data model underlying the GUI with a custom Python-based NetPyNE model. This functionality is at the heart of the GUI and means any change made to the NetPyNE model in the Python kernel is immediately reflected in the GUI and vice versa. The tool’s GUI is available at https://github.com/Neurosim-lab/NetPyNE-UI and is under active development.

Launch online
Source Code
Contributors
SD

Other Tools

See all tools

siibra-explorer

siibra-explorer is built around an interactive 3D view of the brain displaying a unique selection of detailed templates and parcellation maps for the human, macaque, rat or mouse brain, including BigBrain as a microscopic resolution human brain model at its full resolution of 20 micrometres.

Collaboratory

The EBRAINS Collaboratory offers researchers and developers a secure environment to work with others. You control the level of collaboration by sharing your projects with specific users, teams or all of the Internet. Many researchers are sharing their work already; several services, tools, datasets and other resources are publicly available, and many more are available for registered users.

MeshView

MeshView is a web application for real-time 3D display of surface mesh data representing structural parcellations from volumetric atlases, such as the Waxholm Space Atlas of the Sprague Dawley Rat Brain. MeshView is available as an EBRAINS community app, accessible via a collab (further info: https://wiki.ebrains.eu/bin/view/Collabs/image-registration-and-analysis-demo/) Key features: orbiting view with toggleable opaque/transparent/hidden parcellation meshes rendering user defined cut surface as if meshes were solid objects rendering point-clouds (simple type-in, or loaded from a JSON format) coordinate system is compatible with QuickNII (https://www.nitrc.org/projects/quicknii)

Create an account

EBRAINS is open and free. Sign up now for complete access to our tools and services.

Register