SBtabVFGEN

Convert a model that has been hand written in the Sbtab format to VFGEN's format, NEURON's MOD file format, and optionally SBML (this is done if libsbml is installed with R bindings). This model conversion tool can be used by scientists working in the field of systems biology and all adjacent fields that work with ordinary differential equation (ODE) models. It can be helpful when collaborating with other researchers as it keeps the model separate from any programming language choice. The user writes the model in SBtab form, a simple, human readable format; afterwards this SBtab model can be converted to an ODE and further processed via vfgen (an alternative to vfgen is being worked on, if needed). The final result is code for the ODE right hand side function and analytical jacobian function (among other things) in the chosen programming language. This tool prepares a model M for use in numerical analysis application such as parameter estimation