Single Cell Model Builder Notebook

The current version of the Single Cell Model Builder Notebook implements a Use Case of the Brain Simulation Platform. It allows to select among self-consistent configuration files from previous optimizations. The user may choose and visualize an existing morphology from HBP data, choose a self-consistent set of configuration files for the chosen morphology, visualize the electrophysiological features that will be used as reference by the optimization process, visualize and change the parameters of an existing optimization, configure the BluePyOpt optimization algorithm and run the optimization procedure on CSCS and NSG systems. The Use Case allows the user also to choose either a previous optimization from a CSCS container; or choose the result of his/her own optimization from the Collab storage, and then run and save an analysis of the results.

Launch online
Source Code
Contributors
MM RM LLB CAL

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