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Tutorials & E-Library

Would you like to learn how to use the tools and services available on EBRAINS? Here, you can find a list of EBRAINS offerings and links to their tutorials.

Level: Beginner

QUINT Workflow – Atlas-based quantification and spatial analysis

The QUINT workflow takes you through a series of steps developed to enable researchers to quantify and analyse labelled features in a series of histological images of rodent brain sections within a known atlas space. The QuickNII and VisuAlign software are used for precise image registration; ilastik allows efficient identification of labelled objects; finally, the Nutil tool enables quantification of features per atlas region. This combination of steps facilitates semi-automated quantification, eliminating the need for more time-consuming methods, such as stereological analysis with manual delineation of brain regions
More on https://ebrains.eu/service/quint/

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